hapMC Example

Analysis example
The hapMC example allows a user to test simulated multi-marker data. View, Source or click on Page, View Source to view the file.
Files required : hapmc_asp.dat - Linkage pre-makeped pedigree file with a header line
hapmc_asp.rgen - .rgen Parameter File
Output files : hapmc_asp.report
To run this analysis: java -jar hapmc.jar hapMC hapmc_asp.rgen
GenotypeData.dat
The example Genotype Data file is composed of 500 affected sib-pairs. Each individual has full genotype data for 10 markers.
 
Output pedigree phase configurations to file
HapMC example for writing pedigree configurations to file.
Files required : asp.example.dat - Linkage pre-makeped pedigree file with a header line
asp.example.rgen - .rgen Parameter File
Output files : ped_configs.log
To run this analysis: java -jar hapmc.jar hapMC asp.example.rgen

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